Skip to contents

annotate_se_with_drug

Source: R/add_annotation.R
annotate_se_with_drug.Rd

Annotate SummarizedExperiment object with drug annotations

Usage

annotate_se_with_drug(se, drug_annotation, fill = "unknown")

Arguments

se

SummarizedExperiment object containing dose-response data

drug_annotation

data.table with drug annotations

fill

string indicating how unknown drugs should be filled in the DB

Value

SummarizedExperiment object with annotated drugs

Examples

se <- SummarizedExperiment::SummarizedExperiment(
  rowData = data.table::data.table(Gnumber = c("D1", "D2", "D3"))
)
drug_annotation <- get_drug_annotation(data.table::as.data.table(SummarizedExperiment::rowData(se)))
annotated_se <- annotate_se_with_drug(se, drug_annotation)