get_drug_annotation

Get drug annotation data table

Usage

get_drug_annotation(
  data,
  fname = "drugs.csv",
  fill = "unknown",
  annotation_package = if ("gDRinternal" %in% .packages(all.available = TRUE)) {
    
    "gDRinternal"
 } else {
     "gDRtestData"
 }
)

Arguments

data

data.table with drug identifiers to be matched

fname

string with file name containing the annotation

fill

string indicating how unknown drugs should be filled in the DB

annotation_package

string indicating name of the package containing drug annotation

Value

data.table with drug annotations

Examples

data <- data.table::data.table(Gnumber = c("drug1", "drug2", "drug3"))
drug_annotation <- get_drug_annotation(data)