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annotate_se_with_cell_line

Source: R/add_annotation.R
annotate_se_with_cell_line.Rd

Annotate SummarizedExperiment object with cell line annotations

Usage

annotate_se_with_cell_line(se, cell_line_annotation, fill = "unknown")

Arguments

se

SummarizedExperiment object containing dose-response data

cell_line_annotation

data.table with cell line annotations

fill

string indicating how unknown cell lines should be filled in the DB

Value

SummarizedExperiment object with annotated cell lines

Examples

se <- SummarizedExperiment::SummarizedExperiment(
   rowData = data.table::data.table(clid = c("CL1", "CL2", "CL3"))
)
cell_line_annotation <- get_cell_line_annotation(data.table::as.data.table(SummarizedExperiment::rowData(se)))
annotated_se <- annotate_se_with_cell_line(se, cell_line_annotation)