get_cell_line_annotation

Get cell line annotation data table

Usage

get_cell_line_annotation(
  data,
  fname = "cell_lines.csv",
  fill = "unknown",
  annotation_package = if ("gDRinternal" %in% .packages(all.available = TRUE)) {
    
    "gDRinternal"
 } else {
     "gDRtestData"
 }
)

Arguments

data

data.table with cell line identifiers to be matched

fname

string with file name containing the annotation

fill

string indicating how unknown cell lines should be filled in the DB

annotation_package

string indicating name of the package containing cell line annotation

Value

data.table with cell line annotations

Examples

data <- data.table::data.table(clid = c("CL1", "CL2", "CL3"))
cell_line_annotation <- get_cell_line_annotation(data)