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annotate_mae_with_drug

Source: R/add_annotation.R
annotate_mae_with_drug.Rd

Annotate MultiAssayExperiment object with drug annotations

Usage

annotate_mae_with_drug(mae, drug_annotation, fill = "unknown")

Arguments

mae

MultiAssayExperiment object containing dose-response data

drug_annotation

data.table with drug annotations

fill

string indicating how unknown drugs should be filled in the DB

Value

MultiAssayExperiment object with annotated drugs

Examples

mae <- MultiAssayExperiment::MultiAssayExperiment(
   experiments = list(exp1 = SummarizedExperiment::SummarizedExperiment(
     rowData = data.table::data.table(Gnumber = c("D1", "D2", "D3"))
   ))
)
drug_annotation <- get_drug_annotation(data.table::as.data.table(
   SummarizedExperiment::rowData(
     MultiAssayExperiment::experiments(mae)[[1]])))
annotated_mae <- annotate_mae_with_drug(mae, drug_annotation)