Returns the list of all experiment-type profiles used by
apply_fit and apply_fits to resolve default
slicing configuration.
Value
Named list of profile definitions. Each element contains
slicing_cols, slicing_values, input_assay, and
description.
Examples
get_fit_profiles()
#> $`single-agent`
#> $`single-agent`$slicing_cols
#> [1] "normalization_type"
#>
#> $`single-agent`$slicing_values
#> [1] "GR" "RV"
#>
#> $`single-agent`$input_assay
#> [1] "Averaged"
#>
#> $`single-agent`$nested_cols
#> [1] "concentration"
#>
#> $`single-agent`$nested_cols_note
#> [1] "identifier keys resolved at runtime via gDRutils::get_env_identifiers() — actual column names may differ in custom environments"
#>
#> $`single-agent`$description
#> [1] "1D dose-response curve; fit_fn receives one data.table per normalization_type slice, rows indexed by concentration"
#>
#>
#> $`time-course`
#> $`time-course`$slicing_cols
#> [1] "normalization_type"
#>
#> $`time-course`$slicing_values
#> [1] "GR" "RV"
#>
#> $`time-course`$input_assay
#> [1] "Averaged"
#>
#> $`time-course`$nested_cols
#> [1] "concentration" "duration"
#>
#> $`time-course`$nested_cols_note
#> [1] "identifier keys resolved at runtime via gDRutils::get_env_identifiers() — actual column names may differ in custom environments"
#>
#> $`time-course`$description
#> [1] "Time-series per dose; fit_fn receives one data.table per normalization_type slice, rows indexed by concentration x duration (time axis)"
#>
#>
#> $combination
#> $combination$slicing_cols
#> [1] "normalization_type"
#>
#> $combination$slicing_values
#> [1] "GR" "RV"
#>
#> $combination$input_assay
#> [1] "Averaged"
#>
#> $combination$nested_cols
#> [1] "concentration" "concentration2"
#>
#> $combination$nested_cols_note
#> [1] "identifier keys resolved at runtime via gDRutils::get_env_identifiers() — actual column names may differ in custom environments"
#>
#> $combination$description
#> [1] "2D concentration grid; fit_fn receives one data.table per normalization_type slice, rows indexed by concentration x concentration2"
#>
#>