cleanup_metadata — cleanup_metadata • gDRcore

Cleanup a data.table with metadata

Usage

cleanup_metadata(
  df_metadata,
  cell_line_annotation = NULL,
  drug_annotation = NULL
)

Arguments

df_metadata: a data.table with metadata
cell_line_annotation: optional data.table with cell line annotations; if NULL (default), annotations are looked up from gDRinternal or gDRtestData
drug_annotation: optional data.table with drug annotations; if NULL (default), annotations are looked up from gDRinternal or gDRtestData

Value

a data.table with cleaned metadata

Details

Adds annotations and check whether user provided correct input data.

Examples


df <- data.table::data.table(
  clid = "CELL_LINE",
  Gnumber = "DRUG_1",
  Concentration = c(0, 1),
  Duration = 72
)
cleanup_df <- cleanup_metadata(df)