Skip to contents

Import

import_data()
Import raw data

Data

small_combo_data
Small data.table with raw combo data used for processing via gDR
small_data
Small data.table with raw data used for processing via gDR

Report

create_symlink_to_current()
Create symbolic link to current version
format_vector_for_rmd()
Format a Character Vector for RMarkdown Injection
get_next_version_dir()
Get next version directory
run_report()
Run a gDR report pipeline

Incucyte

add_treatment_column()
Add Treatment Column to a Data Table
apply_custom_metadata_tags()
Apply Custom Metadata Tags to Drug Names
cast_to_wide()
Reshape a data.table from long to wide format
filter_treatments()
Filter Treatments from SummarizedExperiment
generate_incucyte_yaml_draft()
Generate a Draft YAML Configuration for Incucyte Analysis
resolve_incucyte_config_path()
Resolve the configuration file an Incucyte report reads