Average biological replicates on the data table side.

Average biological replicates on the data table side.

Usage

average_biological_replicates_dt(
  dt,
  var,
  prettified = FALSE,
  fixed = TRUE,
  geometric_average_fields = get_header("metric_average_fields")$geometric_mean,
  fit_type_average_fields = get_header("metric_average_fields")$fit_type,
  blacklisted_fields = get_header("metric_average_fields")$blacklisted,
  add_sd = FALSE
)

Arguments

dt

data.table with Metric data

var

String representing additional metadata of replicates

prettified

Flag indicating if the provided identifiers in the dt are prettified

fixed

Flag indicating whether to add a fix for -Inf in the geometric mean.

geometric_average_fields

Character vector of column names in dt to take the geometric average of.

fit_type_average_fields

Character vector of column names in dt that should be treated as a column with fit type data

blacklisted_fields

Character vector of column names in dt that should be skipped in averaging

add_sd

Flag indicating whether to add standard deviation and count columns.

Value

data.table without replicates

Examples

dt <- data.table::data.table(a = c(1:10, 1),
b = c(rep("drugA", 10), rep("drugB", 1)))
average_biological_replicates_dt(dt, var = "a")
#>         b
#>    <char>
#> 1:  drugA
#> 2:  drugB