Get the expected header(s) for one field or reset all header fields
Examples
get_header(k = NULL)
#> $manifest
#> $manifest$barcode
#> [1] "Barcode" "Plate"
#>
#> $manifest$template
#> [1] "Template" "Treatment"
#>
#> $manifest$duration
#> [1] "Duration"
#>
#>
#> $raw_data
#> [1] "ReadoutValue" "BackgroundValue" "UntrtReadout" "Day0Readout"
#> [5] "masked"
#>
#> $normalized_results
#> [1] "x" "CorrectedReadout" "GRvalue"
#> [4] "RelativeViability" "DivisionTime" "RefGRvalue"
#> [7] "RefRelativeViability"
#>
#> $averaged_results
#> [1] "x" "x_std" "std_RelativeViability"
#> [4] "std_GRvalue"
#>
#> $response_metrics
#> [1] "x_mean" "x_AOC" "x_AOC_range" "xc50" "x_max"
#> [6] "ec50" "x_inf" "x_0" "h" "r2"
#> [11] "p_value" "rss" "x_sd_avg" "fit_type"
#>
#> $metric_average_fields
#> $metric_average_fields$mean
#> [1] "x_mean" "x_AOC" "x_AOC_range" "x_max" "x_inf"
#> [6] "x_0"
#>
#> $metric_average_fields$geometric_mean
#> [1] "xc50" "ec50" "GR50" "GEC50" "IC50" "EC50" "GR_xc50"
#> [8] "RV_xc50" "GR_ec50" "RV_ec50"
#>
#> $metric_average_fields$fit_type
#> [1] "fit_type" "Fit Type" "Fit Type RV" "Fit Type GR" "RV_fit_type"
#> [6] "GR_fit_type"
#>
#> $metric_average_fields$blacklisted
#> [1] "Tissue" "cellline_tissue"
#> [3] "Reference Division Time" "cellline_ref_div_time"
#> [5] "Parental Identifier" "cellline_parental_identifier"
#>
#>
#> $add_clid
#> $add_clid$cellline_name
#> [1] "CellLineName"
#>
#> $add_clid$cellline_tissue
#> [1] "Tissue"
#>
#> $add_clid$cellline_parental_identifier
#> [1] "parental_identifier"
#>
#> $add_clid$cellline_subtype
#> [1] "subtype"
#>
#> $add_clid$cellline_ref_div_time
#> [1] "ReferenceDivisionTime"
#>
#>
#> $metrics_names
#> x_mean x_AOC x_AOC_range xc50 x_max ec50 x_inf x_0
#> RV "RV_mean" "RV_AOC" "RV_AOC_range" "IC50" "E_max" "EC50" "E_inf" "E_0"
#> GR "GR_mean" "GR_AOC" "GR_AOC_range" "GR50" "GR_max" "GEC50" "GR_inf" "GR_0"
#> h r2 p_value rss x_sd_avg fit_type
#> RV "h_RV" "RV_r2" "RV_p_value" "RV_rss" "RV_sd_avg" "fit_type_RV"
#> GR "h_GR" "GR_r2" "GR_p_value" "GR_rss" "GR_sd_avg" "fit_type_GR"
#>
#> $metrics_results
#> [1] "maxlog10Concentration" "N_conc" "cotrt_value"
#> [4] "source" "x_mean" "x_AOC"
#> [7] "x_AOC_range" "xc50" "x_max"
#> [10] "ec50" "x_inf" "x_0"
#> [13] "h" "r2" "p_value"
#> [16] "rss" "x_sd_avg" "fit_type"
#> [19] "RV_mean" "GR_mean" "RV_AOC"
#> [22] "GR_AOC" "RV_AOC_range" "GR_AOC_range"
#> [25] "IC50" "GR50" "E_max"
#> [28] "GR_max" "EC50" "GEC50"
#> [31] "E_inf" "GR_inf" "E_0"
#> [34] "GR_0" "h_RV" "h_GR"
#> [37] "RV_r2" "GR_r2" "RV_p_value"
#> [40] "GR_p_value" "RV_rss" "GR_rss"
#> [43] "RV_sd_avg" "GR_sd_avg" "fit_type_RV"
#> [46] "fit_type_GR"
#>
#> $controlled
#> $controlled[[1]]
#> [1] "clid"
#>
#> $controlled$barcode
#> [1] "Barcode" "Plate"
#>
#> $controlled$template
#> [1] "Template" "Treatment"
#>
#> $controlled$duration
#> [1] "Duration"
#>
#> $controlled[[5]]
#> [1] "Gnumber"
#>
#> $controlled[[6]]
#> [1] "Concentration"
#>
#> $controlled[[7]]
#> [1] "Gnumber_2"
#>
#> $controlled[[8]]
#> [1] "Gnumber_3"
#>
#> $controlled[[9]]
#> [1] "Gnumber_4"
#>
#> $controlled[[10]]
#> [1] "Gnumber_5"
#>
#> $controlled[[11]]
#> [1] "Gnumber_6"
#>
#> $controlled[[12]]
#> [1] "Gnumber_7"
#>
#> $controlled[[13]]
#> [1] "Gnumber_8"
#>
#> $controlled[[14]]
#> [1] "Gnumber_9"
#>
#> $controlled[[15]]
#> [1] "Gnumber_10"
#>
#> $controlled[[16]]
#> [1] "Concentration_2"
#>
#> $controlled[[17]]
#> [1] "Concentration_3"
#>
#> $controlled[[18]]
#> [1] "Concentration_4"
#>
#> $controlled[[19]]
#> [1] "Concentration_5"
#>
#> $controlled[[20]]
#> [1] "Concentration_6"
#>
#> $controlled[[21]]
#> [1] "Concentration_7"
#>
#> $controlled[[22]]
#> [1] "Concentration_8"
#>
#> $controlled[[23]]
#> [1] "Concentration_9"
#>
#> $controlled[[24]]
#> [1] "Concentration_10"
#>
#>
#> $reserved
#> $reserved$cellline_name
#> [1] "CellLineName"
#>
#> $reserved$cellline_tissue
#> [1] "Tissue"
#>
#> $reserved$cellline_parental_identifier
#> [1] "parental_identifier"
#>
#> $reserved$cellline_subtype
#> [1] "subtype"
#>
#> $reserved$cellline_ref_div_time
#> [1] "ReferenceDivisionTime"
#>
#> $reserved[[6]]
#> [1] "DrugName"
#>
#> $reserved[[7]]
#> [1] "masked"
#>
#> $reserved[[8]]
#> [1] "DrugName_2"
#>
#> $reserved[[9]]
#> [1] "DrugName_3"
#>
#> $reserved[[10]]
#> [1] "DrugName_4"
#>
#> $reserved[[11]]
#> [1] "DrugName_5"
#>
#> $reserved[[12]]
#> [1] "DrugName_6"
#>
#> $reserved[[13]]
#> [1] "DrugName_7"
#>
#> $reserved[[14]]
#> [1] "DrugName_8"
#>
#> $reserved[[15]]
#> [1] "DrugName_9"
#>
#> $reserved[[16]]
#> [1] "DrugName_10"
#>
#> $reserved[[17]]
#> [1] "drug_moa_2"
#>
#> $reserved[[18]]
#> [1] "drug_moa_3"
#>
#> $reserved[[19]]
#> [1] "drug_moa_4"
#>
#> $reserved[[20]]
#> [1] "drug_moa_5"
#>
#> $reserved[[21]]
#> [1] "drug_moa_6"
#>
#> $reserved[[22]]
#> [1] "drug_moa_7"
#>
#> $reserved[[23]]
#> [1] "drug_moa_8"
#>
#> $reserved[[24]]
#> [1] "drug_moa_9"
#>
#> $reserved[[25]]
#> [1] "drug_moa_10"
#>
#> $reserved[[26]]
#> [1] "ReadoutValue"
#>
#> $reserved[[27]]
#> [1] "BackgroundValue"
#>
#> $reserved[[28]]
#> [1] "UntrtReadout"
#>
#> $reserved[[29]]
#> [1] "Day0Readout"
#>
#> $reserved[[30]]
#> [1] "masked"
#>
#> $reserved[[31]]
#> [1] "x"
#>
#> $reserved[[32]]
#> [1] "CorrectedReadout"
#>
#> $reserved[[33]]
#> [1] "GRvalue"
#>
#> $reserved[[34]]
#> [1] "RelativeViability"
#>
#> $reserved[[35]]
#> [1] "DivisionTime"
#>
#> $reserved[[36]]
#> [1] "RefGRvalue"
#>
#> $reserved[[37]]
#> [1] "RefRelativeViability"
#>
#> $reserved[[38]]
#> [1] "x"
#>
#> $reserved[[39]]
#> [1] "x_std"
#>
#> $reserved[[40]]
#> [1] "std_RelativeViability"
#>
#> $reserved[[41]]
#> [1] "std_GRvalue"
#>
#> $reserved[[42]]
#> [1] "maxlog10Concentration"
#>
#> $reserved[[43]]
#> [1] "N_conc"
#>
#> $reserved[[44]]
#> [1] "cotrt_value"
#>
#> $reserved[[45]]
#> [1] "source"
#>
#> $reserved[[46]]
#> [1] "x_mean"
#>
#> $reserved[[47]]
#> [1] "x_AOC"
#>
#> $reserved[[48]]
#> [1] "x_AOC_range"
#>
#> $reserved[[49]]
#> [1] "xc50"
#>
#> $reserved[[50]]
#> [1] "x_max"
#>
#> $reserved[[51]]
#> [1] "ec50"
#>
#> $reserved[[52]]
#> [1] "x_inf"
#>
#> $reserved[[53]]
#> [1] "x_0"
#>
#> $reserved[[54]]
#> [1] "h"
#>
#> $reserved[[55]]
#> [1] "r2"
#>
#> $reserved[[56]]
#> [1] "p_value"
#>
#> $reserved[[57]]
#> [1] "rss"
#>
#> $reserved[[58]]
#> [1] "x_sd_avg"
#>
#> $reserved[[59]]
#> [1] "fit_type"
#>
#> $reserved[[60]]
#> [1] "RV_mean"
#>
#> $reserved[[61]]
#> [1] "GR_mean"
#>
#> $reserved[[62]]
#> [1] "RV_AOC"
#>
#> $reserved[[63]]
#> [1] "GR_AOC"
#>
#> $reserved[[64]]
#> [1] "RV_AOC_range"
#>
#> $reserved[[65]]
#> [1] "GR_AOC_range"
#>
#> $reserved[[66]]
#> [1] "IC50"
#>
#> $reserved[[67]]
#> [1] "GR50"
#>
#> $reserved[[68]]
#> [1] "E_max"
#>
#> $reserved[[69]]
#> [1] "GR_max"
#>
#> $reserved[[70]]
#> [1] "EC50"
#>
#> $reserved[[71]]
#> [1] "GEC50"
#>
#> $reserved[[72]]
#> [1] "E_inf"
#>
#> $reserved[[73]]
#> [1] "GR_inf"
#>
#> $reserved[[74]]
#> [1] "E_0"
#>
#> $reserved[[75]]
#> [1] "GR_0"
#>
#> $reserved[[76]]
#> [1] "h_RV"
#>
#> $reserved[[77]]
#> [1] "h_GR"
#>
#> $reserved[[78]]
#> [1] "RV_r2"
#>
#> $reserved[[79]]
#> [1] "GR_r2"
#>
#> $reserved[[80]]
#> [1] "RV_p_value"
#>
#> $reserved[[81]]
#> [1] "GR_p_value"
#>
#> $reserved[[82]]
#> [1] "RV_rss"
#>
#> $reserved[[83]]
#> [1] "GR_rss"
#>
#> $reserved[[84]]
#> [1] "RV_sd_avg"
#>
#> $reserved[[85]]
#> [1] "GR_sd_avg"
#>
#> $reserved[[86]]
#> [1] "fit_type_RV"
#>
#> $reserved[[87]]
#> [1] "fit_type_GR"
#>
#> $reserved[[88]]
#> [1] "WellRow"
#>
#> $reserved[[89]]
#> [1] "WellColumn"
#>
#>
#> $ordered_1
#> [1] "CellLineName" "Tissue" "Duration" "DrugName"
#> [5] "Concentration" "DrugName_2" "Concentration_2" "DrugName_3"
#> [9] "Concentration_3" "DrugName_4" "Concentration_4" "DrugName_5"
#> [13] "Concentration_5" "DrugName_6" "Concentration_6" "DrugName_7"
#> [17] "Concentration_7" "DrugName_8" "Concentration_8" "DrugName_9"
#> [21] "Concentration_9" "DrugName_10" "Concentration_10"
#>
#> $ordered_2
#> $ordered_2[[1]]
#> [1] "x"
#>
#> $ordered_2[[2]]
#> [1] "CorrectedReadout"
#>
#> $ordered_2[[3]]
#> [1] "GRvalue"
#>
#> $ordered_2[[4]]
#> [1] "RelativeViability"
#>
#> $ordered_2[[5]]
#> [1] "DivisionTime"
#>
#> $ordered_2[[6]]
#> [1] "RefGRvalue"
#>
#> $ordered_2[[7]]
#> [1] "RefRelativeViability"
#>
#> $ordered_2[[8]]
#> [1] "x"
#>
#> $ordered_2[[9]]
#> [1] "x_std"
#>
#> $ordered_2[[10]]
#> [1] "std_RelativeViability"
#>
#> $ordered_2[[11]]
#> [1] "std_GRvalue"
#>
#> $ordered_2[[12]]
#> [1] "maxlog10Concentration"
#>
#> $ordered_2[[13]]
#> [1] "N_conc"
#>
#> $ordered_2[[14]]
#> [1] "cotrt_value"
#>
#> $ordered_2[[15]]
#> [1] "source"
#>
#> $ordered_2[[16]]
#> [1] "x_mean"
#>
#> $ordered_2[[17]]
#> [1] "x_AOC"
#>
#> $ordered_2[[18]]
#> [1] "x_AOC_range"
#>
#> $ordered_2[[19]]
#> [1] "xc50"
#>
#> $ordered_2[[20]]
#> [1] "x_max"
#>
#> $ordered_2[[21]]
#> [1] "ec50"
#>
#> $ordered_2[[22]]
#> [1] "x_inf"
#>
#> $ordered_2[[23]]
#> [1] "x_0"
#>
#> $ordered_2[[24]]
#> [1] "h"
#>
#> $ordered_2[[25]]
#> [1] "r2"
#>
#> $ordered_2[[26]]
#> [1] "p_value"
#>
#> $ordered_2[[27]]
#> [1] "rss"
#>
#> $ordered_2[[28]]
#> [1] "x_sd_avg"
#>
#> $ordered_2[[29]]
#> [1] "fit_type"
#>
#> $ordered_2[[30]]
#> [1] "RV_mean"
#>
#> $ordered_2[[31]]
#> [1] "GR_mean"
#>
#> $ordered_2[[32]]
#> [1] "RV_AOC"
#>
#> $ordered_2[[33]]
#> [1] "GR_AOC"
#>
#> $ordered_2[[34]]
#> [1] "RV_AOC_range"
#>
#> $ordered_2[[35]]
#> [1] "GR_AOC_range"
#>
#> $ordered_2[[36]]
#> [1] "IC50"
#>
#> $ordered_2[[37]]
#> [1] "GR50"
#>
#> $ordered_2[[38]]
#> [1] "E_max"
#>
#> $ordered_2[[39]]
#> [1] "GR_max"
#>
#> $ordered_2[[40]]
#> [1] "EC50"
#>
#> $ordered_2[[41]]
#> [1] "GEC50"
#>
#> $ordered_2[[42]]
#> [1] "E_inf"
#>
#> $ordered_2[[43]]
#> [1] "GR_inf"
#>
#> $ordered_2[[44]]
#> [1] "E_0"
#>
#> $ordered_2[[45]]
#> [1] "GR_0"
#>
#> $ordered_2[[46]]
#> [1] "h_RV"
#>
#> $ordered_2[[47]]
#> [1] "h_GR"
#>
#> $ordered_2[[48]]
#> [1] "RV_r2"
#>
#> $ordered_2[[49]]
#> [1] "GR_r2"
#>
#> $ordered_2[[50]]
#> [1] "RV_p_value"
#>
#> $ordered_2[[51]]
#> [1] "GR_p_value"
#>
#> $ordered_2[[52]]
#> [1] "RV_rss"
#>
#> $ordered_2[[53]]
#> [1] "GR_rss"
#>
#> $ordered_2[[54]]
#> [1] "RV_sd_avg"
#>
#> $ordered_2[[55]]
#> [1] "GR_sd_avg"
#>
#> $ordered_2[[56]]
#> [1] "fit_type_RV"
#>
#> $ordered_2[[57]]
#> [1] "fit_type_GR"
#>
#> $ordered_2[[58]]
#> [1] "ReadoutValue"
#>
#> $ordered_2[[59]]
#> [1] "BackgroundValue"
#>
#> $ordered_2[[60]]
#> [1] "UntrtReadout"
#>
#> $ordered_2[[61]]
#> [1] "Day0Readout"
#>
#> $ordered_2[[62]]
#> [1] "masked"
#>
#> $ordered_2[[63]]
#> [1] "ReferenceDivisionTime"
#>
#> $ordered_2[[64]]
#> [1] "clid"
#>
#> $ordered_2[[65]]
#> [1] "Gnumber"
#>
#> $ordered_2[[66]]
#> [1] "Gnumber_2"
#>
#> $ordered_2[[67]]
#> [1] "Gnumber_3"
#>
#> $ordered_2[[68]]
#> [1] "Gnumber_4"
#>
#> $ordered_2[[69]]
#> [1] "Gnumber_5"
#>
#> $ordered_2[[70]]
#> [1] "Gnumber_6"
#>
#> $ordered_2[[71]]
#> [1] "Gnumber_7"
#>
#> $ordered_2[[72]]
#> [1] "Gnumber_8"
#>
#> $ordered_2[[73]]
#> [1] "Gnumber_9"
#>
#> $ordered_2[[74]]
#> [1] "Gnumber_10"
#>
#> $ordered_2$barcode
#> [1] "Barcode" "Plate"
#>
#> $ordered_2$template
#> [1] "Template" "Treatment"
#>
#> $ordered_2$duration
#> [1] "Duration"
#>
#> $ordered_2[[78]]
#> [1] "WellRow"
#>
#> $ordered_2[[79]]
#> [1] "WellColumn"
#>
#>
#> $id
#> [1] "rId" "cId"
#>
#> $iso_position
#> [1] "iso_level" "pos_x" "pos_y" "pos_x_ref" "pos_y_ref"
#>
#> $excess
#> [1] "smooth" "hsa_excess" "bliss_excess"
#>
#> $scores
#> [1] "hsa_score" "bliss_score" "CIScore_50" "CIScore_80"
#>
#> $isobolograms
#> [1] "normalization_type" "iso_level" "pos_x"
#> [4] "pos_y" "pos_x_ref" "pos_y_ref"
#> [7] "log2_CI" "log10_ratio_conc"
#>
#> $fit_source
#> [1] "fit_source"
#>
#> $obsolete
#> [1] "RV" "GR" "Excess"
#>
get_header("manifest")
#> $barcode
#> [1] "Barcode" "Plate"
#>
#> $template
#> [1] "Template" "Treatment"
#>
#> $duration
#> [1] "Duration"
#>