Create data.table with input data for testing purposes
Usage
prepareData(cell_lines, drugs, conc = 10^(seq(-3, 1, 0.5)))Arguments
- cell_lines
data.table with cell line info
- drugs
data.table with drug info
- conc
vector of doses
Examples
prepareData(create_synthetic_cell_lines(), create_synthetic_drugs())
#> Barcode clid CellLineName Tissue ReferenceDivisionTime Gnumber
#> <char> <char> <char> <char> <num> <char>
#> 1: plate_1 CL00010 cellline_AA tissue_x 22 G00001
#> 2: plate_1 CL00011 cellline_BA tissue_x 26 G00001
#> 3: plate_1 CL00012 cellline_CA tissue_x 30 G00001
#> 4: plate_1 CL00013 cellline_DA tissue_x 34 G00001
#> 5: plate_1 CL00014 cellline_EA tissue_x 38 G00001
#> ---
#> 712796: plate_3 CL00095 cellline_KO tissue_z 62 G00240
#> 712797: plate_3 CL00096 cellline_LO tissue_z 66 G00240
#> 712798: plate_3 CL00097 cellline_MO tissue_z 70 G00240
#> 712799: plate_3 CL00098 cellline_NO tissue_z 74 G00240
#> 712800: plate_3 CL00099 cellline_OO tissue_z 78 G00240
#> DrugName drug_moa Concentration
#> <char> <char> <num>
#> 1: drug_001 moa_A 0
#> 2: drug_001 moa_A 0
#> 3: drug_001 moa_A 0
#> 4: drug_001 moa_A 0
#> 5: drug_001 moa_A 0
#> ---
#> 712796: drug_240 moa_X 10
#> 712797: drug_240 moa_X 10
#> 712798: drug_240 moa_X 10
#> 712799: drug_240 moa_X 10
#> 712800: drug_240 moa_X 10