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get_test_dataset_paths

Source: R/get_test_datasets.R
get_test_dataset_paths.Rd

Returns named vector of absolute paths to test datasets.

Usage

get_test_dataset_paths(datasets_dir = NULL, pattern = "finalMAE_")

Arguments

datasets_dir

path to directory with datasets (default NULL). If NULL, then inst/testdata directory from gDRtestData will be used.

pattern

used to: (1) filter to qs2 files from the dataset_dir path and (2) prettify the labels of the files

Value

named vector of absolute paths

Author

Kamil Foltyński kamil.foltynski@contractors.roche.com

Examples


get_test_dataset_paths()
#>                                                                                 combo_2dose_nonoise 
#>    "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_2dose_nonoise.qs2" 
#>                                                                                combo_2dose_nonoise2 
#>   "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_2dose_nonoise2.qs2" 
#>                                                                                combo_2dose_nonoise3 
#>   "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_2dose_nonoise3.qs2" 
#>                                                                                    combo_codilution 
#>       "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_codilution.qs2" 
#>                                                                              combo_codilution_small 
#> "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_codilution_small.qs2" 
#>                                                                                        combo_matrix 
#>           "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_matrix.qs2" 
#>                                                                                  combo_matrix_small 
#>     "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_matrix_small.qs2" 
#>                                                                                        combo_triple 
#>           "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_triple.qs2" 
#>                                                                                              medium 
#>                 "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_medium.qs2" 
#>                                                                                               small 
#>                  "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_small.qs2" 
#>                                                                                      small_no_noise 
#>         "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_small_no_noise.qs2" 
#>                                                                                             wLigand 
#>                "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_wLigand.qs2" 
path <- system.file("testdata", package = "gDRtestData", mustWork = TRUE)
get_test_dataset_paths(path)
#>                                                                                 combo_2dose_nonoise 
#>    "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_2dose_nonoise.qs2" 
#>                                                                                combo_2dose_nonoise2 
#>   "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_2dose_nonoise2.qs2" 
#>                                                                                combo_2dose_nonoise3 
#>   "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_2dose_nonoise3.qs2" 
#>                                                                                    combo_codilution 
#>       "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_codilution.qs2" 
#>                                                                              combo_codilution_small 
#> "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_codilution_small.qs2" 
#>                                                                                        combo_matrix 
#>           "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_matrix.qs2" 
#>                                                                                  combo_matrix_small 
#>     "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_matrix_small.qs2" 
#>                                                                                        combo_triple 
#>           "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_combo_triple.qs2" 
#>                                                                                              medium 
#>                 "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_medium.qs2" 
#>                                                                                               small 
#>                  "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_small.qs2" 
#>                                                                                      small_no_noise 
#>         "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_small_no_noise.qs2" 
#>                                                                                             wLigand 
#>                "/tmp/RtmpgP9OoR/temp_libpath218a7f9effe1/gDRtestData/testdata/finalMAE_wLigand.qs2"