Skip to contents

Gene Expression (Log2 TPM)

Source: R/dataset.R
DepMap_OmicsExpressionProteinCodingGenesTPMLogp1.Rd

RNA-seq based gene expression for protein-coding genes.

Format

Matrix with cell lines as rows and genes as columns

Loading

data.table::fread( system.file("depmap_data/OmicsExpressionProteinCodingGenesTPMLogp1.csv.gz", package = "gDRtestData"))

Description

  • Rows: Cell line identifiers

  • Columns: NCBI gene IDs (Entrez format)

  • Values: Log2(TPM + 1) transformed expression

  • Only protein-coding genes included

Source

DepMap Portal - Data

Details

Downloaded May 26, 2026 from DepMap Portal (version 24Q4).

Citation: 24Q4 DepMap Release, including CRISPR Screens, PRISM Drug Screens, Copy Number, Mutation, Expression, and Fusions DepMap, Broad (2024). DepMap 24Q4 Public. Figshare+. Dataset. https://doi.org/10.25452/figshare.plus.27993248.v1