Convert a PharmacoSet to a data.table that is prepare for input into gDR pipeline — convert_pset_to_df • gDRimport

Convert a PharmacoSet to a data.table that is prepare for input into gDR pipeline

Usage

convert_pset_to_df(pharmacoset, run_parallel = TRUE, workers = 2L)

Arguments

pharmacoset: PharmacoSet object
run_parallel: logical, TRUE (default) if to run functions in Parallel, FALSE to run in serial
workers: integer, number of workers defaults to 2L if run_parallel is TRUE

Value

data.table of PharmacoSet's dose response data with column names aligned with gDR standard

Author

Jermiah Joseph -- collaboration with BHKLab

Examples

pset <- suppressMessages(getPSet(
  "Tavor_2020", 
  psetDir = system.file("extdata/pset", package = "gDRimport"),
  use_local_PSets_list = TRUE
))
dt <- convert_pset_to_df(pset)
gDRutils::reset_env_identifiers()