Get PharmacoSet

Usage

getPSet(
  pset_name,
  psetDir = getwd(),
  canonical = FALSE,
  timeout = 600,
  use_local_PSets_list = FALSE
)

Arguments

pset_name: string with the name of the PharmacoSet
psetDir: string with the temporary directory for the PharmacoSet
canonical: logical flag indicating if the PSet canonical
timeout: maximum number of seconds allowed for PSet download
use_local_PSets_list: logical flag if PSets list should be used from local. If FALSE PSets list will be taken from web.

Value

PharmacoSet object

Examples

 
suppressMessages(getPSet(
  "Tavor_2020", 
  psetDir = system.file("extdata/pset", package = "gDRimport"),
  use_local_PSets_list = TRUE
))
#> <PharmacoSet>
#> Name:  Tavor 
#> Date Created:  Fri Feb  4 17:32:17 2022 
#> Number of samples:  53 
#> Molecular profiles:
#> RNAseq :
#>   Dim: 24137, 43 
#> Treatment response:
#> Drug pertubation:
#>    Please look at pertNumber(cSet) to determine number of experiments  for each drug-sample combination.
#> Drug sensitivity:
#>    Number of Experiments:  2668 
#>    Please look at sensNumber(cSet) to determine number of  experiments for each drug-sample combination.