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Validate SummarizedExperiment object

Source: R/experiment_validators.R
validate_SE.Rd

Function validates correctness of SE by checking multiple cases:

  • detection of duplicated rowData/colData,

  • incompatibility of rownames/colnames,

  • occurrence of necessary assays,

  • detection of mismatch of CLIDs inside colData and colnames (different order),

  • correctness of metadata names.

Usage

validate_SE(se, expect_single_agent = FALSE)

Arguments

se

SummarizedExperiment object produced by the gDR pipeline

expect_single_agent

a logical indicating if the function should check whether the SummarizedExperiment is single-agent data

Value

NULL invisibly if the SummarizedExperiment is valid. Throws an error if the SummarizedExperiment is not valid.

Examples

mae <- get_synthetic_data("finalMAE_small.qs2")
se <- mae[[1]]
validate_SE(se)