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Validate MultiAssayExperiment object

Source: R/experiment_validators.R
validate_MAE.Rd

Function validates correctness of SE included in MAE by checking multiple cases:

  • detection of duplicated rowData/colData,

  • incompatibility of rownames/colnames,

  • occurrence of necessary assays,

  • detection of mismatch of CLIDs inside colData and colnames (different order),

  • correctness of metadata names.

Usage

validate_MAE(mae)

Arguments

mae

MultiAssayExperiment object produced by the gDR pipeline

Value

NULL invisibly if the MultiAssayExperiment is valid. Throws an error if the MultiAssayExperiment is not valid.

Author

Bartosz Czech bartosz.czech@contractors.roche.com

Examples

mae <- get_synthetic_data("finalMAE_small") 
validate_MAE(mae)