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Promote a nested field to be represented as a metadata field of the SummarizedExperiment as either the rowData or colData.

Source: R/concatentate_SEs.R
promote_fields.Rd

Promote a nested field to be represented as a metadata field of the SummarizedExperiment as either the rowData or colData.

Usage

promote_fields(se, fields, MARGIN = c(1, 2))

Arguments

se

SummarizedExperiment object.

fields

Character vector of nested fields in a BumpyMatrix object to promote to metadata fields of a se.

MARGIN

Numeric of values 1 or 2 indicating whether to promote fields to rows or columns respectively.

Value

A SummarizedExperiment object with new dimensions resulting from promoting given fields.

Details

Revert this operation using demote_fields.

See also

demote_fields

Examples

mae <- get_synthetic_data("finalMAE_small.qs2")
se <- mae[[1]]
se <- promote_fields(se, "ReadoutValue", 2)
#> Warning: dropping assay 'Controls' from the final SE
#> Warning: dropping assay 'Normalized' from the final SE
#> Warning: dropping assay 'Averaged' from the final SE
#> Warning: dropping assay 'Metrics' from the final SE