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df_to_bm_assay

Source: R/df_to_bm_assay.R
df_to_bm_assay.Rd

Convert data.table with dose-response data into a BumpyMatrix assay.

Usage

df_to_bm_assay(data, discard_keys = NULL)

Arguments

data

data.table with drug-response data

discard_keys

a vector of keys that should be discarded

Value

BumpyMatrix object

Details

The 'assay' is simply a BumpyMatrix object with rownames being the treatment ids, colnames being the ids of the cell lines and values with dose-response data for given cell lines under given conditions.

Examples

df_to_bm_assay(data.table::data.table(Gnumber = 2, clid = "A"))
#> 1 x 1 BumpyDataFrameMatrix
#> rownames: 1 
#> colnames: 1 
#> preview [1,1]:
#>   DataFrame with 1 row and 0 columns