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Load DepMap merged data for one selected metadata

Source: R/helpers-prism.R
prep_dt_depmap_meta.Rd

Load DepMap merged data for one selected metadata

Usage

prep_dt_depmap_meta(meta_data_path, metadata_col = "PatientRace")

Arguments

meta_data_path

string with path to metadata file describing all cancer models/cell lines

Value

A named list with elements, that may be input to prep_dt_assoc

  • dt_depmap data.table with feature data from DepMap (wide format),

  • selected_feat_meta_col string name of metadata column.

Examples

meta_data_path <- system.file("depmap_data/Model.csv.gz", package = "gDRtestData")
dt_depmap_meta <- prep_dt_depmap_meta(meta_data_path)