Visualization for the quality control of the fitting for single-agent data — plot_fitting_acc • gDRplots

Visualization for the quality control of the fitting for single-agent data

Usage

plot_fitting_acc(dt_assay, cl_name, normalization_type = "GR")

Arguments

dt_assay: data.table representing data from the Metrics assay, outputted by gDRutils::convert_se_assay_to_dt(se, "Metrics") and single-agent SummarizedExperiment
cl_name: string cell line name to be plotted (Cell Line Name)
normalization_type: string with normalization_types to be selected one of: "GR" ("GRvalue") or "RV" ("RelativeViability")

Value

ggplot object containing panel with lollipop plots with r2 and rss values for each drug

Author

Bartosz Czech czech.bartosz@external.gene.com

Examples

mae <- gDRutils::get_synthetic_data("small")
se <- mae[[gDRutils::get_supported_experiments("sa")]]

dt_metrics <- gDRutils::convert_se_assay_to_dt(se, "Metrics")
cl_name <- dt_metrics[["CellLineName"]][1]

plot_fitting_acc(dt_assay = dt_metrics,
                 cl_name = cl_name,
                 normalization_type = "RV")